Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses

Identifieur interne : 001038 ( Main/Exploration ); précédent : 001037; suivant : 001039

Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses

Auteurs : Torstein Tengs [Norvège] ; Christine M. Jonassen

Source :

RBID : PMC:5456283

Abstract

The mobile genetic element s2m has been described in several families of single-stranded RNA viruses. The function remains elusive, but an increasing number of s2m-containing sequences are being deposited in publicly available databases. Currently, more than 700 coronavirus sequences containing s2m can be found in GenBank, including the severe acute respiratory syndrome (SARS) coronavirus genome. This is an updated review of the pattern of s2m in coronaviruses, the possible functional implications and the evolutionary history.


Url:
DOI: 10.3390/diseases4030027
PubMed: 28933407
PubMed Central: 5456283


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses</title>
<author>
<name sortKey="Tengs, Torstein" sort="Tengs, Torstein" uniqKey="Tengs T" first="Torstein" last="Tengs">Torstein Tengs</name>
<affiliation wicri:level="1">
<nlm:aff id="af1-diseases-04-00027">Norwegian Veterinary Institute, Ullevaalsveien 68, 0454 Oslo, Norway</nlm:aff>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Norwegian Veterinary Institute, Ullevaalsveien 68, 0454 Oslo</wicri:regionArea>
<placeName>
<settlement type="city">Oslo</settlement>
<region nuts="2">Østlandet</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Jonassen, Christine M" sort="Jonassen, Christine M" uniqKey="Jonassen C" first="Christine M." last="Jonassen">Christine M. Jonassen</name>
<affiliation>
<nlm:aff id="af2-diseases-04-00027">Centre for Laboratory Medicine, Østfold Hospital Trust, Kalnesveien 300, 1714 Grålum, Norway;
<email>chrjon@so-hf.no</email>
</nlm:aff>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">28933407</idno>
<idno type="pmc">5456283</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5456283</idno>
<idno type="RBID">PMC:5456283</idno>
<idno type="doi">10.3390/diseases4030027</idno>
<date when="2016">2016</date>
<idno type="wicri:Area/Pmc/Corpus">001744</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001744</idno>
<idno type="wicri:Area/Pmc/Curation">001744</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001744</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000718</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000718</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:28933407</idno>
<idno type="wicri:Area/PubMed/Corpus">000C28</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000C28</idno>
<idno type="wicri:Area/PubMed/Curation">000C28</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000C28</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000C65</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000C65</idno>
<idno type="wicri:Area/Ncbi/Merge">002E53</idno>
<idno type="wicri:Area/Ncbi/Curation">002E53</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002E53</idno>
<idno type="wicri:Area/Main/Merge">001040</idno>
<idno type="wicri:Area/Main/Curation">001038</idno>
<idno type="wicri:Area/Main/Exploration">001038</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses</title>
<author>
<name sortKey="Tengs, Torstein" sort="Tengs, Torstein" uniqKey="Tengs T" first="Torstein" last="Tengs">Torstein Tengs</name>
<affiliation wicri:level="1">
<nlm:aff id="af1-diseases-04-00027">Norwegian Veterinary Institute, Ullevaalsveien 68, 0454 Oslo, Norway</nlm:aff>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Norwegian Veterinary Institute, Ullevaalsveien 68, 0454 Oslo</wicri:regionArea>
<placeName>
<settlement type="city">Oslo</settlement>
<region nuts="2">Østlandet</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Jonassen, Christine M" sort="Jonassen, Christine M" uniqKey="Jonassen C" first="Christine M." last="Jonassen">Christine M. Jonassen</name>
<affiliation>
<nlm:aff id="af2-diseases-04-00027">Centre for Laboratory Medicine, Østfold Hospital Trust, Kalnesveien 300, 1714 Grålum, Norway;
<email>chrjon@so-hf.no</email>
</nlm:aff>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Diseases</title>
<idno type="eISSN">2079-9721</idno>
<imprint>
<date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>The mobile genetic element s2m has been described in several families of single-stranded RNA viruses. The function remains elusive, but an increasing number of s2m-containing sequences are being deposited in publicly available databases. Currently, more than 700 coronavirus sequences containing s2m can be found in GenBank, including the severe acute respiratory syndrome (SARS) coronavirus genome. This is an updated review of the pattern of s2m in coronaviruses, the possible functional implications and the evolutionary history.</p>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct>
<analytic>
<author>
<name sortKey="Yang, D" uniqKey="Yang D">D. Yang</name>
</author>
<author>
<name sortKey="Leibowitz, J L" uniqKey="Leibowitz J">J.L. Leibowitz</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Nicholson, B L" uniqKey="Nicholson B">B.L. Nicholson</name>
</author>
<author>
<name sortKey="White, K A" uniqKey="White K">K.A. White</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Yang, D" uniqKey="Yang D">D. Yang</name>
</author>
<author>
<name sortKey="Liu, P" uniqKey="Liu P">P. Liu</name>
</author>
<author>
<name sortKey="Giedroc, D P" uniqKey="Giedroc D">D.P. Giedroc</name>
</author>
<author>
<name sortKey="Leibowitz, J" uniqKey="Leibowitz J">J. Leibowitz</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Liu, P" uniqKey="Liu P">P. Liu</name>
</author>
<author>
<name sortKey="Li, L" uniqKey="Li L">L. Li</name>
</author>
<author>
<name sortKey="Millership, J J" uniqKey="Millership J">J.J. Millership</name>
</author>
<author>
<name sortKey="Kang, H" uniqKey="Kang H">H. Kang</name>
</author>
<author>
<name sortKey="Leibowitz, J L" uniqKey="Leibowitz J">J.L. Leibowitz</name>
</author>
<author>
<name sortKey="Giedroc, D P" uniqKey="Giedroc D">D.P. Giedroc</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Williams, G D" uniqKey="Williams G">G.D. Williams</name>
</author>
<author>
<name sortKey="Chang, R Y" uniqKey="Chang R">R.Y. Chang</name>
</author>
<author>
<name sortKey="Brian, D A" uniqKey="Brian D">D.A. Brian</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Tengs, T" uniqKey="Tengs T">T. Tengs</name>
</author>
<author>
<name sortKey="Kristoffersen, A B" uniqKey="Kristoffersen A">A.B. Kristoffersen</name>
</author>
<author>
<name sortKey="Bachvaroff, T R" uniqKey="Bachvaroff T">T.R. Bachvaroff</name>
</author>
<author>
<name sortKey="Jonassen, C M" uniqKey="Jonassen C">C.M. Jonassen</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Monceyron, C" uniqKey="Monceyron C">C. Monceyron</name>
</author>
<author>
<name sortKey="Grinde, B" uniqKey="Grinde B">B. Grinde</name>
</author>
<author>
<name sortKey="Jonassen, T O" uniqKey="Jonassen T">T.O. Jonassen</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Jonassen, T O" uniqKey="Jonassen T">T.O. Jonassen</name>
</author>
<author>
<name sortKey="Monceyron, C" uniqKey="Monceyron C">C. Monceyron</name>
</author>
<author>
<name sortKey="Lee, T W" uniqKey="Lee T">T.W. Lee</name>
</author>
<author>
<name sortKey="Kurtz, J B" uniqKey="Kurtz J">J.B. Kurtz</name>
</author>
<author>
<name sortKey="Grinde, B" uniqKey="Grinde B">B. Grinde</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Robertson, M P" uniqKey="Robertson M">M.P. Robertson</name>
</author>
<author>
<name sortKey="Igel, H" uniqKey="Igel H">H. Igel</name>
</author>
<author>
<name sortKey="Baertsch, R" uniqKey="Baertsch R">R. Baertsch</name>
</author>
<author>
<name sortKey="Haussler, D" uniqKey="Haussler D">D. Haussler</name>
</author>
<author>
<name sortKey="Ares, M" uniqKey="Ares M">M. Ares</name>
</author>
<author>
<name sortKey="Scott, W G" uniqKey="Scott W">W.G. Scott</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Jonassen, C M" uniqKey="Jonassen C">C.M. Jonassen</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Jonassen, C M" uniqKey="Jonassen C">C.M. Jonassen</name>
</author>
<author>
<name sortKey="Jonassen, T O" uniqKey="Jonassen T">T.O. Jonassen</name>
</author>
<author>
<name sortKey="Grinde, B" uniqKey="Grinde B">B. Grinde</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Schutze, H" uniqKey="Schutze H">H. Schutze</name>
</author>
<author>
<name sortKey="Ulferts, R" uniqKey="Ulferts R">R. Ulferts</name>
</author>
<author>
<name sortKey="Schelle, B" uniqKey="Schelle B">B. Schelle</name>
</author>
<author>
<name sortKey="Bayer, S" uniqKey="Bayer S">S. Bayer</name>
</author>
<author>
<name sortKey="Granzow, H" uniqKey="Granzow H">H. Granzow</name>
</author>
<author>
<name sortKey="Hoffmann, B" uniqKey="Hoffmann B">B. Hoffmann</name>
</author>
<author>
<name sortKey="Mettenleiter, T C" uniqKey="Mettenleiter T">T.C. Mettenleiter</name>
</author>
<author>
<name sortKey="Ziebuhr, J" uniqKey="Ziebuhr J">J. Ziebuhr</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Su, S" uniqKey="Su S">S. Su</name>
</author>
<author>
<name sortKey="Wong, G" uniqKey="Wong G">G. Wong</name>
</author>
<author>
<name sortKey="Shi, W" uniqKey="Shi W">W. Shi</name>
</author>
<author>
<name sortKey="Liu, J" uniqKey="Liu J">J. Liu</name>
</author>
<author>
<name sortKey="Lai, A C" uniqKey="Lai A">A.C. Lai</name>
</author>
<author>
<name sortKey="Zhou, J" uniqKey="Zhou J">J. Zhou</name>
</author>
<author>
<name sortKey="Liu, W" uniqKey="Liu W">W. Liu</name>
</author>
<author>
<name sortKey="Bi, Y" uniqKey="Bi Y">Y. Bi</name>
</author>
<author>
<name sortKey="Gao, G F" uniqKey="Gao G">G.F. Gao</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Varani, G" uniqKey="Varani G">G. Varani</name>
</author>
<author>
<name sortKey="Mcclain, W H" uniqKey="Mcclain W">W.H. McClain</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Goebel, S J" uniqKey="Goebel S">S.J. Goebel</name>
</author>
<author>
<name sortKey="Taylor, J" uniqKey="Taylor J">J. Taylor</name>
</author>
<author>
<name sortKey="Masters, P S" uniqKey="Masters P">P.S. Masters</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Liu, S" uniqKey="Liu S">S. Liu</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Bartel, D P" uniqKey="Bartel D">D.P. Bartel</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Shapiro, J S" uniqKey="Shapiro J">J.S. Shapiro</name>
</author>
<author>
<name sortKey="Varble, A" uniqKey="Varble A">A. Varble</name>
</author>
<author>
<name sortKey="Pham, A M" uniqKey="Pham A">A.M. Pham</name>
</author>
<author>
<name sortKey="Tenoever, B R" uniqKey="Tenoever B">B.R. Tenoever</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Boss, I W" uniqKey="Boss I">I.W. Boss</name>
</author>
<author>
<name sortKey="Renne, R" uniqKey="Renne R">R. Renne</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Hackenberg, M" uniqKey="Hackenberg M">M. Hackenberg</name>
</author>
<author>
<name sortKey="Rodriguez Ezpeleta, N" uniqKey="Rodriguez Ezpeleta N">N. Rodriguez-Ezpeleta</name>
</author>
<author>
<name sortKey="Aransay, A M" uniqKey="Aransay A">A.M. Aransay</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Bredenbeek, P J" uniqKey="Bredenbeek P">P.J. Bredenbeek</name>
</author>
<author>
<name sortKey="Pachuk, C J" uniqKey="Pachuk C">C.J. Pachuk</name>
</author>
<author>
<name sortKey="Noten, A F" uniqKey="Noten A">A.F. Noten</name>
</author>
<author>
<name sortKey="Charite, J" uniqKey="Charite J">J. Charite</name>
</author>
<author>
<name sortKey="Luytjes, W" uniqKey="Luytjes W">W. Luytjes</name>
</author>
<author>
<name sortKey="Weiss, S R" uniqKey="Weiss S">S.R. Weiss</name>
</author>
<author>
<name sortKey="Spaan, W J" uniqKey="Spaan W">W.J. Spaan</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Sawicki, S G" uniqKey="Sawicki S">S.G. Sawicki</name>
</author>
<author>
<name sortKey="Sawicki, D L" uniqKey="Sawicki D">D.L. Sawicki</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Silva, P A G C" uniqKey="Silva P">P.A.G.C. Silva</name>
</author>
<author>
<name sortKey="Pereira, C F" uniqKey="Pereira C">C.F. Pereira</name>
</author>
<author>
<name sortKey="Dalebout, T J" uniqKey="Dalebout T">T.J. Dalebout</name>
</author>
<author>
<name sortKey="Spaan, W J M" uniqKey="Spaan W">W.J.M. Spaan</name>
</author>
<author>
<name sortKey="Bredenbeek, P J" uniqKey="Bredenbeek P">P.J. Bredenbeek</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Pijlman, G P" uniqKey="Pijlman G">G.P. Pijlman</name>
</author>
<author>
<name sortKey="Funk, A" uniqKey="Funk A">A. Funk</name>
</author>
<author>
<name sortKey="Kondratieva, N" uniqKey="Kondratieva N">N. Kondratieva</name>
</author>
<author>
<name sortKey="Leung, J" uniqKey="Leung J">J. Leung</name>
</author>
<author>
<name sortKey="Torres, S" uniqKey="Torres S">S. Torres</name>
</author>
<author>
<name sortKey="Van Der Aa, L" uniqKey="Van Der Aa L">L. van der Aa</name>
</author>
<author>
<name sortKey="Liu, W J" uniqKey="Liu W">W.J. Liu</name>
</author>
<author>
<name sortKey="Palmenberg, A C" uniqKey="Palmenberg A">A.C. Palmenberg</name>
</author>
<author>
<name sortKey="Shi, P Y" uniqKey="Shi P">P.Y. Shi</name>
</author>
<author>
<name sortKey="Hall, R A" uniqKey="Hall R">R.A. Hall</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Chlebowski, A" uniqKey="Chlebowski A">A. Chlebowski</name>
</author>
<author>
<name sortKey="Lubas, M" uniqKey="Lubas M">M. Lubas</name>
</author>
<author>
<name sortKey="Jensen, T H" uniqKey="Jensen T">T.H. Jensen</name>
</author>
<author>
<name sortKey="Dziembowski, A" uniqKey="Dziembowski A">A. Dziembowski</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Villordo, S M" uniqKey="Villordo S">S.M. Villordo</name>
</author>
<author>
<name sortKey="Gamarnik, A V" uniqKey="Gamarnik A">A.V. Gamarnik</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Fricke, M" uniqKey="Fricke M">M. Fricke</name>
</author>
<author>
<name sortKey="Dunnes, N" uniqKey="Dunnes N">N. Dunnes</name>
</author>
<author>
<name sortKey="Zayas, M" uniqKey="Zayas M">M. Zayas</name>
</author>
<author>
<name sortKey="Bartenschlager, R" uniqKey="Bartenschlager R">R. Bartenschlager</name>
</author>
<author>
<name sortKey="Niepmann, M" uniqKey="Niepmann M">M. Niepmann</name>
</author>
<author>
<name sortKey="Marz, M" uniqKey="Marz M">M. Marz</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Geigenmuller, U" uniqKey="Geigenmuller U">U. Geigenmuller</name>
</author>
<author>
<name sortKey="Ginzton, N H" uniqKey="Ginzton N">N.H. Ginzton</name>
</author>
<author>
<name sortKey="Matsui, S M" uniqKey="Matsui S">S.M. Matsui</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations>
<list>
<country>
<li>Norvège</li>
</country>
<region>
<li>Østlandet</li>
</region>
<settlement>
<li>Oslo</li>
</settlement>
</list>
<tree>
<noCountry>
<name sortKey="Jonassen, Christine M" sort="Jonassen, Christine M" uniqKey="Jonassen C" first="Christine M." last="Jonassen">Christine M. Jonassen</name>
</noCountry>
<country name="Norvège">
<region name="Østlandet">
<name sortKey="Tengs, Torstein" sort="Tengs, Torstein" uniqKey="Tengs T" first="Torstein" last="Tengs">Torstein Tengs</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001038 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001038 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:5456283
   |texte=   Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:28933407" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a SrasV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021